Cluster Functions Helper to Handle Unknown Errors

This function is only intended for use in your own cluster functions implementation.

Simply constructs a SubmitJobResult object with status code 101, NA as batch id and an informative error message containing the output of the OS command in output.

Usage

cfHandleUnknownSubmitError(cmd, exit.code, output)

Arguments

cmd

[character(1)]
OS command used to submit the job, e.g. qsub.

exit.code

[integer(1)]
Exit code of the OS command, should not be 0.

output

[character]
Output of the OS command, hopefully an informative error message. If these are multiple lines in a vector, they are automatically joined.

Value

[SubmitJobResult].

See also

Other ClusterFunctionsHelper: cfBrewTemplate(), cfKillJob(), cfReadBrewTemplate(), makeClusterFunctions(), makeSubmitJobResult(), runOSCommand()